2E3P

Crystal structure of CERT START domain in complex with C16-cearmide (P1)

Structural Biology Knowledgebase: 2E3P SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.217

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2E3P

Classification: LIPID TRANSPORT

Total Structure Weight: 58939.80

Macromolecule Entities
Molecule Chains Length Organism Details
Lipid-transfer protein CERT A, B 255 Homo sapiens Fragment: CERT START DOMAIN (RESIDUES 347-598)
Gene Name(s): COL4A3BP Gene View CERT STARD11
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
16C
Query on 16C

A, B N-((E,2S,3R)-1,3-DIHYDROXYOCTADEC-4-EN-2- YL)PALMITAMIDE
3R,, (2S (Synonym)
C34 H67 N O3
YDNKGFDKKRUKPY-TURZORIXSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.4 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.217
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 45.98 α = 77.72
b = 49.70 β = 71.06
c = 62.37 γ = 82.10

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-11-28
  • Released Date: 2007-12-18
  • Deposition author(s): Kudo, N., Kumagai, K., Wakatsuki, S., Nishijima, M., Hanada, K., Kato, R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4