2DY1

Crystal structure of EF-G-2 from Thermus thermophilus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.204
  • R-Value Work: 0.188

Literature

Macromolecules
Sequence Display for 2DY1

Classification: SIGNALING PROTEIN TRANSLATION

Total Structure Weight: 73779.84

Macromolecule Entities
Molecule Chains Length Organism Details
Elongation factor G A 665 Thermus thermophilus Gene Name(s): TTHA1498
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GTP
Query on GTP

A GUANOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O14 P3
XKMLYUALXHKNFT-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.204
  • R-Value Work: 0.188
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 159.19 α = 90.00
b = 56.13 β = 104.57
c = 92.19 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-09-04
  • Released Date: 2007-09-25
  • Deposition author(s): Wang, H., Takemoto, C., Murayama, K., Terada, T., Chen, L., Liu, Z.J., Wang, B.C., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History

  • Version 1_0: 2007-09-25

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance