2DN2

1.25A resolution crystal structure of human hemoglobin in the deoxy form

Structural Biology Knowledgebase: 2DN2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Observed: 0.179

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2DN2

Classification: OXYGEN STORAGE / TRANSPORT

Total Structure Weight: 64547.79

Macromolecule Entities
Molecule Chains Length Organism Details
Hemoglobin alpha subunit A, C 141 Homo sapiens Gene Name(s): HBA1 Gene View HBA2 Gene View
Hemoglobin beta subunit B, D 146 Homo sapiens Gene Name(s): HBB Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B, C, D PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Observed: 0.179
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 63.10 α = 90.00
b = 82.91 β = 99.29
c = 53.65 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-04-25
  • Released Date: 2006-05-09
  • Deposition author(s): Park, S.-Y., Yokoyama, T., Shibayama, N., Shiro, Y., Tame, J.R.
  • Previous versions: 2DFQ

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4