2DFK

Crystal structure of the CDC42-Collybistin II complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.180

Literature

Macromolecules
Sequence Display for 2DFK

Classification: CELL CYCLE

Total Structure Weight: 140386.28

Macromolecule Entities
Molecule Chains Length Organism Details
collybistin II A, C 402 Rattus norvegicus Fragment: residues 10-411
Gene Name(s): Arhgef9
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
cell division cycle 42 isoform 1 B, D 194 Homo sapiens Gene Name(s): CDC42 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

B, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, D GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.180
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 57.96 α = 90.00
b = 147.50 β = 90.00
c = 167.22 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-03-02
  • Released Date: 2006-05-02
  • Deposition author(s): Xiang, S., Kim, E.Y., Connelly, J.J., Nassar, N., Kirsch, J., Winking, J., Schwarz, G., Schindelin, H.

Revision History

  • Version 1_0: 2006-05-02

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance