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Crystal structure of human peptidylarginine deiminase 4 in complex with histone H3 N-terminal tail including Arg8
 
 
DOI:10.2210/pdb2dew/pdb
2DEW
 
Primary Citation
spinning wheel
 
 
  •  
    Move Section Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 76443.22
     
    Molecule:Protein-arginine deiminase type IV
    Polymer:1Type:polypeptide(L)Length:671
    Chains:X
    EC#:3.5.3.15 Go to IUBMB EC entry  
    Mutation:C645A
    Molecule:10-mer peptide from histone H3
    Polymer:2Type:polypeptide(L)Length:10
    Chains:A
     
     
  •  
    Move Section Source Hide
    Polymer: 1
    Scientific Name: Homo sapiens Go to NCBI Taxonomy entry Common Name: Human Expression System: Escherichia coli bl21(de3)  
    Polymer: 2
    Scientific Name: Synthetic construct Go to NCBI Taxonomy entry  
     
     
  •  
    Move Section Related PDB Entries Hide
    Id Details
    2DEX  the same protein in complex with histone H3 N-terminal peptide including Arg17 
    2DEY  the same protein in complex with histone H4 N-terminal tail including Arg3 
     
     
  •  
    Move Section Ligand Chemical Component Hide
    Identifier Name Formula Interaction View Links
    CA     CALCIUM ION Ca 3DLigand Explorer Link out to Ligand Expos:CA Link out to SuperLigands:CA Link out to SuperHapten:CA
    SO4     SULFATE ION O4 S 3DLigand Explorer Link out to Ligand Expos:SO4 Link out to SuperLigands:SO4 Link out to SuperHapten:SO4
     
     
  •  
    Move Section Derived Data Hide
     
     
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  •  
    Move Section Deposition Summary Hide
    Authors:   Arita, K.,   Shimizu, T.,   Hashimoto, H.,   Hidaka, Y.,   Yamada, M.,   Sato, M.

    Deposition:   2006-02-18
    Release:   2006-04-11
    Last Modified (REVDAT):   2009-02-24
     
     
  •  
    Move Section Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Experimental Data:   Download Structure Factors  [ EDS External Link to EDS ]
    View a histogram of Resolution Resolution[Å]: 2.10
    R-Value: 0.206 (obs.)
    R-Free: 0.241
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 146.27 α = 90.00 
    b = 60.77 β = 124.26 
    c = 115.15 γ = 90.00