2D60

Crystal structure of deoxy human hemoglobin complexed with two L35 molecules

Structural Biology Knowledgebase: 2D60 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.195

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2D60

Classification: OXYGEN STORAGE / TRANSPORT

Total Structure Weight: 65314.15

Macromolecule Entities
Molecule Chains Length Organism Details
Hemoglobin alpha subunit A, C 141 Homo sapiens Gene Name(s): HBA1 Gene View HBA2 Gene View
Hemoglobin beta subunit B, D 146 Homo sapiens Gene Name(s): HBB Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B, C, D PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
L35
Query on L35

B, D 2-[4-({[(3,5-DICHLOROPHENYL)AMINO]CARBONYL}AMINO)PHENOXY]- 2-METHYLPROPANOIC ACID
C17 H16 Cl2 N2 O4
OYJPTSMWFKGZJM-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.195
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.36 α = 90.00
b = 81.38 β = 99.34
c = 53.51 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-11-08
  • Released Date: 2006-03-07
  • Deposition author(s): Yokoyama, T., Neya, S., Tsuneshige, A., Yonetani, T., Park, S.Y., Tame, J.R.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4