2D1P

crystal structure of heterohexameric TusBCD proteins, which are crucial for the tRNA modification


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.209

Literature

Macromolecules
Sequence Display for 2D1P

Classification: TRANSLATION

Total Structure Weight: 116621.99

Macromolecule Entities
Molecule Chains Length Organism Details
Hypothetical UPF0163 protein yheN A, D, G 140 Escherichia coli Gene Name(s): tusD yheN b3345 JW3307
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Hypothetical UPF0116 protein yheM B, E, H 119 Escherichia coli Gene Name(s): tusC yheM b3344 JW3306
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Hypothetical protein yheL C, F, I 95 Escherichia coli Gene Name(s): tusB yheL b3343 JW3305
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

H SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.15 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.209
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 141.39 α = 90.00
b = 141.39 β = 90.00
c = 135.69 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-08-30
  • Released Date: 2006-02-28
  • Deposition author(s): Numata, T., Fukai, S., Ikeuchi, Y., Suzuki, T., Nureki, O.

Revision History

  • Version 1_0: 2006-02-28

    Type: Initial release

  • Version 1_1: 2008-04-30

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance