2CK3

Azide inhibited bovine F1-ATPase

Structural Biology Knowledgebase: 2CK3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.197

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2CK3

Classification: HYDROLASE

Total Structure Weight: 374814.97

Macromolecule Entities
Molecule Chains Length Organism Details
ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL A, B, C 510 Bos taurus EC#: 3.6.3.14 IUBMB
Gene Name(s): ATP5A1 Gene View ATP5A2
ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL D, E, F 482 Bos taurus EC#: 3.6.3.14 IUBMB
Gene Name(s): ATP5B Gene View
ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL G 272 Bos taurus EC#: 3.6.3.14 IUBMB
Gene Name(s): ATP5C1 Gene View ATP5C
ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL H 146 Bos taurus EC#: 3.6.3.14 IUBMB
Gene Name(s): ATP5D Gene View
ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL I 50 Bos taurus EC#: 3.6.3.14 IUBMB
Gene Name(s): ATP5E Gene View

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: F-type ATPase

Protein Name: ATP synthase (F1c10)


Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ANP
Query on ANP

A, B, C, F PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
C10 H17 N6 O12 P3
PVKSNHVPLWYQGJ-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ADP
Query on ADP

D ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

E PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AZI
Query on AZI

D AZIDE ION
N3
IVRMZWNICZWHMI-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, F MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.197
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 261.16 α = 90.00
b = 105.22 β = 90.00
c = 122.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-04-10
  • Released Date: 2006-05-08
  • Deposition author(s): Bowler, M.W., Montgomery, M.G., Leslie, A.G.W., Walker, J.E.

Revision History

  • 2014-01-22
    Type: Refinement description | Details: REMARK 3
  • 2014-01-22
    Type: Polymer description | Details: COMPND
  • 2014-01-22
    Type: Citation | Details: REMARK 1, JRNL
  • 2011-07-13
    Type: Refinement description | Details: Fixed TLS group
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4