Macromolecules
Sequence Display for 2CDP

Classification: HYDROLASE

Total Structure Weight: 72648.12

Macromolecule Entities
Molecule Chains Length Organism Details
BETA-AGARASE 1 A, B, C, D 160 Saccharophagus degradans Fragment: CARBOHYDRATE-BINDING MODULE, RESIDUES 456-593
Gene Name(s): agaB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GAL
Query on GAL

A, B, C, D BETA-D-GALACTOSE
C6 H12 O6
WQZGKKKJIJFFOK-FPRJBGLDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AAL
Query on AAL

A, B, C, D 3,6-ANHYDRO-L-GALACTOSE
C6 H10 O5
DCQFFOLNJVGHLW-DSOBHZJASA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, C, D 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B, C, D CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B, C, D CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.253
  • R-Value Work: 0.210
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 53.72 α = 90.00
b = 55.00 β = 90.00
c = 195.91 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-01-26
  • Released Date: 2006-02-08
  • Deposition author(s): Henshaw, J., Horne, A., Van Bueren, A.L., Money, V.A., Bolam, D.N., Czjzek, M., Weiner, R.M., Hutcheson, S.W., Davies, G.J., Boraston, A.B., Gilbert, H.J.

Revision History

  • Version 1_0: 2006-02-08

    Type: Initial release

  • Version 1_1: 2011-06-02

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-06-28

    Type: Data collection