2BYJ

Ornithine aminotransferase mutant Y85I

Structural Biology Knowledgebase: 2BYJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.02 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.207

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2BYJ

Classification: TRANSFERASE

Total Structure Weight: 146374.03

Macromolecule Entities
Molecule Chains Length Organism Details
ORNITHINE AMINOTRANSFERASE A, B, C 439 Homo sapiens EC#: 2.6.1.13 IUBMB
Mutation: Y85I
Gene Name(s): OAT Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A, B, C PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.02 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.207
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 115.72 α = 90.00
b = 115.72 β = 90.00
c = 186.55 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-08-02
  • Released Date: 2005-09-07
  • Deposition author(s): Markova, M., Peneff, C., Hewlins, M.J.E., Schirmer, T., John, R.A.

Revision History

  • 2013-01-30
    Type: Citation | Details: JRNL
  • 2013-01-30
    Type: Non-polymer description | Details: HETSYN,FORMUL
  • 2013-01-30
    Type: Geometry validation | Details: REMARK 500
  • 2013-01-30
    Type: Function and keywords | Details: KEYWDS
  • 2013-01-30
    Type: Other | Details: REMARK 375,REMARK 525
  • 2013-01-30
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2013-01-30
    Type: Version format compliance | Details: REMARK 4