2BOP

CRYSTAL STRUCTURE AT 1.7 ANGSTROMS OF THE BOVINE PAPILLOMAVIRUS-1 E2 DNA-BINDING DOMAIN BOUND TO ITS DNA TARGET

Structural Biology Knowledgebase: 2BOP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Observed: 0.201

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2BOP

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 15156.44


Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (E2) A 85 Deltapapillomavirus 4 Gene Name(s): E2
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*CP*GP*AP*CP*CP*GP*AP*CP*GP*TP*CP*GP*GP*TP*CP*G )-3') B 17 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
YB
Query on YB

A, B YTTERBIUM (III) ION
Yb
AWSFICBXMUKWSK-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Observed: 0.201
  • Space Group: R 3 2

Unit Cell:

Length (Å) Angle (°)
a = 64.60 α = 61.80
b = 64.60 β = 61.80
c = 64.60 γ = 61.80

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1994-01-13
  • Released Date: 1994-01-31
  • Deposition author(s): Hegde, R.S., Grossman, S.R., Laimins, L.A., Sigler, P.B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4