2BKW

Yeast alanine:glyoxylate aminotransferase YFL030w


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.57 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.199

Literature

Macromolecules
Sequence Display for 2BKW

Classification: TRANSFERASE

Total Structure Weight: 42604.48

Macromolecule Entities
Molecule Chains Length Organism Details
ALANINE-GLYOXYLATE AMINOTRANSFERASE 1 A 385 Saccharomyces cerevisiae EC#: 2.6.1.44 IUBMB
Details: PYRIDOXAL 5'-PHOSPHATE LINK TO A 201, GLYOXYLATE
Gene Name(s): AGX1 YFL030W
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLV
Query on GLV

A GLYOXYLIC ACID
GLYOXALATE, GLYOXYLATE (Synonym)
C2 H2 O3
HHLFWLYXYJOTON-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.57 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.199
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 57.40 α = 90.00
b = 57.40 β = 90.00
c = 184.50 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-02-21
  • Released Date: 2005-11-02
  • Deposition author(s): Meyer, P., Liger, D., Leulliot, N., Quevillon-Cheruel, S., Zhou, C.Z., Borel, F., Ferrer, J.L., Poupon, A., Janin, J., van Tilbeurgh, H.

Revision History

  • 2015-11-18
    Type: Atomic model, Database references, Derived calculations, Non-polymer description, Other, Refinement description, Source and taxonomy, Structure summary, Version format compliance