2BK3

HUMAN MONOAMINE OXIDASE B IN COMPLEX WITH FARNESOL

Structural Biology Knowledgebase: 2BK3 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.225

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2BK3

Classification: OXIDOREDUCTASE

Total Structure Weight: 119692.53

Macromolecule Entities
Molecule Chains Length Organism Details
AMINE OXIDASE [FLAVIN-CONTAINING] B A, B 520 Homo sapiens EC#: 1.4.3.4 IUBMB
Gene Name(s): MAOB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: inferred by homology | Group: MONOTOPIC MEMBRANE PROTEINS

Subgroup Name: Oxidases

Protein Name: Monoamine Oxidase B


Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FOH
Query on FOH

A, B FARNESOL
C15 H26 O
CRDAMVZIKSXKFV-FBXUGWQNSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
FOH Ki: 800 - >1000000 nM (88 - 100) BindingDB

Ki: 2300 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.225
  • Space Group: C 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 132.63 α = 90.00
b = 222.10 β = 90.00
c = 86.96 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-02-10
  • Released Date: 2005-02-14
  • Deposition author(s): Binda, C., Edmondson, D.E., Mattevi, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4