2BHK

Crystal structure of human growth and differentiation factor 5 (GDF5)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.168

Literature

Macromolecules
Sequence Display for 2BHK

Classification: GROWTH FACTOR

Total Structure Weight: 13899.11

Macromolecule Entities
Molecule Chains Length Organism Details
GROWTH DIFFERENTIATION FACTOR 5 A 120 Homo sapiens Details: INTERCHAIN DISULFIDE LINK BETWEEN TWO CRYSTALLOGRAPHICALLY RELATED MONOMERS
Gene Name(s): GDF5 Gene View BMP14 CDMP1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
IPA
Query on IPA

A ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.168
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 98.20 α = 90.00
b = 98.20 β = 90.00
c = 43.70 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-01-12
  • Released Date: 2005-03-11
  • Deposition author(s): Schreuder, H., Liesum, A., Pohl, J., Kruse, M., Koyama, M.

Revision History

  • 2011-05-08
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance
  • 2017-06-28
    Type: Data collection