2B00

Crystal Structure of Porcine Pancreatic Phospholipase A2 in Complex with Glycocholate

Structural Biology Knowledgebase: 2B00 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.186

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2B00

Classification: HYDROLASE

Total Structure Weight: 14555.59

Macromolecule Entities
Molecule Chains Length Organism Details
Phospholipase A2, major isoenzyme A 124 Sus scrofa EC#: 3.1.1.4 IUBMB
Gene Name(s): PLA2G1B Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GCH
Query on GCH

A GLYCOCHOLIC ACID
N-CHOLYLGLYCINE (Synonym)
C26 H43 N O6
RFDAIACWWDREDC-FRVQLJSFSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.210
  • R-Value Work: 0.186
  • Space Group: P 31 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 69.58 α = 90.00
b = 69.58 β = 90.00
c = 64.18 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-09-12
  • Released Date: 2006-11-14
  • Deposition author(s): Pan, Y.H., Bahnson, B.J., Jain, M.K.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4