2AZR

Crystal structure of PTP1B with Bicyclic Thiophene inhibitor

Structural Biology Knowledgebase: 2AZR SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.223

Literature

Macromolecules
Sequence Display for 2AZR

Classification: HYDROLASE

Total Structure Weight: 35087.22

Macromolecule Entities
Molecule Chains Length Organism Details
Tyrosine-protein phosphatase, non-receptor type 1 A 299 Homo sapiens EC#: 3.1.3.48 IUBMB
Fragment: Catalytic Domain, residues 1-299
Gene Name(s): PTPN1 Gene View PTP1B
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
982
Query on 982

A 3-(CARBOXYMETHOXY)THIENO[2,3-B]PYRIDINE-2- CARBOXYLIC ACID
C10 H7 N O5 S
JGZSWLHKOMFYHS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
982 Ki: 230000 nM (100) BindingDB

Ki: 230000 nM  BindingMOAD
Ki: 230000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.223
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 88.32 α = 90.00
b = 88.32 β = 90.00
c = 104.04 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2005-09-12
  • Released Date: 2005-12-06
  • Deposition author(s): Moretto, A.F., Kirincich, S.J., Xu, W.X., Smith, M.J., Wan, Z.K., Wilson, D.P., Follows, B.C., Binnun, E., Joseph-McCarthy, D., Foreman, K., Erbe, D.V., Zhang, Y.L., Tam, S.K., Tam, S.Y., Lee, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4