2ZVA

Lyn Tyrosine Kinase Domain-Dasatinib complex

Structural Biology Knowledgebase: 2ZVA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2ZVA

Classification: transferase

Total Structure Weight: 32298.89

Macromolecule Entities
Molecule Chains Length Organism Details
Tyrosine-protein kinase Lyn A 279 Mus musculus EC#: 2.7.10.2 IUBMB
Fragment: Kinase Domain, residues 239-512
Gene Name(s): Lyn

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1N1
Query on 1N1

A N-(2-CHLORO-6-METHYLPHENYL)-2-({6-[4-(2-HYDROXYETHYL)PIPERAZIN- 1-YL]-2-METHYLPYRIMIDIN-4-YL}AMINO)-1,3-THIAZOLE- 5-CARBOXAMIDE
Dasatinib (Synonym)
C22 H26 Cl N7 O2 S
ZBNZXTGUTAYRHI-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1N1 Kd: 0.57 - 570 nM (97) BindingDB

N/A in BindingMoad
IC50: 11 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.231
  • R-Value Work: 0.198
  • Space Group: H 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 127.38 α = 90.00
b = 127.38 β = 90.00
c = 55.62 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-11-04
  • Released Date: 2008-11-11
  • Deposition author(s): Williams, N.K., Rossjohn, J.

Revision History

  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4