2Z54

The Influence of I47A Mutation on Reduced Susceptibility to the Protease Inhibitor Lopinavir

Structural Biology Knowledgebase: 2Z54 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.31 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.199

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2Z54

Classification: HYDROLASE

Total Structure Weight: 22280.47

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 Protease A, B 99 Human immunodeficiency virus 1 EC#: 3.4.23.16 IUBMB
Fragment: UNP residues 501-599
Mutation: I47A, I54V
Gene Name(s): gag-pol

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AB1
Query on AB1

A N-{1-BENZYL-4-[2-(2,6-DIMETHYL-PHENOXY)-ACETYLAMINO]- 3-HYDROXY-5-PHENYL-PENTYL}-3-METHYL-2-(2- OXO-TETRAHYDRO-PYRIMIDIN-1-YL)-BUTYRAMIDE
ABT-378, LOPINAVIR (Synonym)
C37 H48 N4 O5
KJHKTHWMRKYKJE-SUGCFTRWSA-N
Ligand Explorer
 
JSmol
BME
Query on BME

A, B BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.31 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.199
  • Space Group: P 61
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 62.25 α = 90.00
b = 62.25 β = 90.00
c = 82.15 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-06-28
  • Released Date: 2008-07-01
  • Deposition author(s): Brynda, J., Klara, S., Kozisek, M., Lepsik, M., Machala, L., Konvalinka, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4