2YP2

Haemagglutinin of 2004 Human H3N2 Virus


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 2YP2

Classification: VIRAL PROTEIN

Total Structure Weight: 59818.11

Macromolecule Entities
Molecule Chains Length Organism Details
HEMAGGLUTININ A 503 Influenza a virus Fragment: TRYPSIN RELEASED ECTODOMAIN, RESIDUES 17-519
Mutation: R329Q
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EPE
Query on EPE

A 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TAM
Query on TAM

A TRIS(HYDROXYETHYL)AMINOMETHANE
C7 H17 N O3
GKODZWOPPOTFGA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.195
  • R-Value Work: 0.176
  • Space Group: H 3 2

Unit Cell:

Length (Å) Angle (°)
a = 100.92 α = 90.00
b = 100.92 β = 90.00
c = 387.18 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-29
  • Released Date: 2012-11-07
  • Deposition author(s): Xiong, X., Lin, Y.P., Wharton, S.A., Martin, S.R., Coombs, P.J., Vachieri, S.G., Christodoulou, E., Walker, P.A., Liu, J., Skehel, J.J., Gamblin, S.J., Hay, A.J., Daniels, R.S., McCauley, J.W.

Revision History

  • 2013-01-16
    Type: Citation | Details: JRNL
  • 2012-12-26
    Type: Citation | Details: JRNL
  • 2012-12-26
    Type: Entry authorship | Details: AUTHOR