West Nile Virus NS2B-NS3 protease in complex with 3,4- dichlorophenylacetyl-Lys-Lys-GCMA
2YOL
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase
    Structure Weight: 25310.28
    Molecule: SERINE PROTEASE SUBUNIT NS2B, SERINE PROTEASE NS3
    Polymer: 1 Type: protein Length: 230
    Chains: A
    EC#: 3.4.21.91    3.6.1.15    3.6.4.13   
    Fragment: NS2B, RESIDUES 1420-1466,AND NS3,1502-1671
    Details: RESIDUES SER47 TO PRO91 BELONG TO NS2B, WHICH WE DESIGNATED AS MOLECULE A IN THE ASSOCIATED PUBLICATION. RESIDUES GLY1002 TO GLU1169 (RESIDUE NUMBERS WERE INCREMENTED BY 1000) BELONG TO NS3, WHICH WE DESIGNATED AS MOLECULE B IN THE ASSOCIATED PUBLICATION.
    Organism: West Nile virus
    UniProtKB: Search PDB | P06935   Protein Feature View
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: West nile virus   Taxonomy   Expression System: Escherichia coli  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CL
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    CL Cl
    CHLORIDE ION
    EBN
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    EBN C28 H46 Cl2 N8 O3
    (S)-6-amino-N-((S)-6-amino-1-(((1r,4S)-4- guanidinocyclohexyl)methylamino)-1-oxohexan- 2-yl)-2-(2-(3,4-dichlorophenyl)acetamido)hexanamide
    NI
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    NI Ni
    NICKEL (II) ION
     
  •   External Ligand Annotations Hide
    Identifier   Binding Affinity (Sequence Identity %)
    EBN
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    EBN
    N/Ain BindingDB
    N/Ain BindingMoad
    Ki: 130 nM - data from PDBbind  
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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