2YAU

X-ray structure of the Leishmania infantum tryopanothione reductase in complex with auranofin

Structural Biology Knowledgebase: 2YAU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.319
  • R-Value Work: 0.267

Literature

Macromolecules
Sequence Display for 2YAU

Classification: OXIDOREDUCTASE

Total Structure Weight: 114963.84

Macromolecule Entities
Molecule Chains Length Organism Details
TRYPANOTHIONE REDUCTASE A, B 511 Leishmania infantum EC#: 1.8.1.12 IUBMB
Gene Name(s): TRYR LINJ_05_0350
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NDP
Query on NDP

A, B NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H30 N7 O17 P3
ACFIXJIJDZMPPO-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
TS8
Query on TS8

A, B 3,4,5-TRIACETYLOXY-6-(ACETYLOXYMETHYL)OXANE- 2-THIOL
C14 H20 O9 S
SFOZKJGZNOBSHF-RGDJUOJXSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
AU
Query on AU

A, B GOLD ION
Au
ZBKIUFWVEIBQRT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.319
  • R-Value Work: 0.267
  • Space Group: P 41
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 103.06 α = 90.00
b = 103.06 β = 90.00
c = 191.60 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2011-02-24
  • Released Date: 2012-01-11
  • Deposition author(s): Baiocco, P., Ilari, A., Colotti, G.

Revision History

  • 2012-02-08
    Type: Other | Details: Citation