2Y1W

CRYSTAL STRUCTURE OF COACTIVATOR ASSOCIATED ARGININE METHYLTRANSFERASE 1 (CARM1) IN COMPLEX WITH SINEFUNGIN AND INDOLE INHIBITOR

Structural Biology Knowledgebase: 2Y1W SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.205

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2Y1W

Classification: TRANSFERASE

Total Structure Weight: 160972.80

Macromolecule Entities
Molecule Chains Length Organism Details
HISTONE-ARGININE METHYLTRANSFERASE CARM1 A, B, C, D 348 Homo sapiens EC#: 2.1.1.319 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 135-482
Gene Name(s): CARM1 Gene View PRMT4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
849
Query on 849

A, B, C, D 2-{4-[3-FLUORO-2-(2-METHOXYPHENYL)-1H-INDOL- 5-YL] PIPERIDIN-1-YL}-N-METHYLETHANAMINE
C23 H28 F N3 O
SPSRJAZORUFUOI-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SFG
Query on SFG

A, B, C, D SINEFUNGIN
ADENOSYL-ORNITHINE (Synonym)
C15 H23 N7 O5
LMXOHSDXUQEUSF-YECHIGJVSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
849 N/A in BindingDB
N/A in BindingMoad
Kd: 465 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.244
  • R-Value Work: 0.205
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 74.90 α = 90.00
b = 98.47 β = 90.00
c = 207.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-12-10
  • Released Date: 2011-03-23
  • Deposition author(s): Sack, J.S., Thieffine, S., Bandiera, T., Fasolini, M., Duke, G.J., Jayaraman, L., Kish, K.F., Klei, H.E., Purandare, A.V., Rosettani, P., Troiani, S., Xie, D., Bertrand, J.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4