2XSZ

The dodecameric human RuvBL1:RuvBL2 complex with truncated domains II


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.178

Literature

Macromolecules
Sequence Display for 2XSZ

Classification: HYDROLASE

Total Structure Weight: 253299.91

Macromolecule Entities
Molecule Chains Length Organism Details
RUVB-LIKE 1 A, B, C 367 Homo sapiens EC#: 3.6.4.12 IUBMB
Details: DOMAIN II WAS TRUNCATED BETWEEN RESIDUES T127 AND E233. A 4-RESIDUE LINKER WITH SEQUENCE GPPG WAS INSERTED TO REPLACE THE DELETED REGION
Gene Name(s): RUVBL1 Gene View INO80H NMP238 TIP49 TIP49A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RUVB-LIKE 2 D, E, F 378 Homo sapiens EC#: 3.6.4.12 IUBMB
Details: DOMAIN II WAS TRUNCATED BETWEEN RESIDUES E134 AND E237. A 4-RESIDUE LINKER WITH SEQUENCE GPPG WAS INSERTED TO REPLACE THE DELETED REGION
Gene Name(s): RUVBL2 Gene View INO80J TIP48 TIP49B CGI-46
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A, B, C, D, E, F ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D, E, F L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.205
  • R-Value Work: 0.178
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 111.82 α = 90.00
b = 187.93 β = 90.00
c = 244.89 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-10-01
  • Released Date: 2011-10-05
  • Deposition author(s): Gorynia, S., Bandeiras, T.M., Matias, P.M., Pinho, F.G., McVey, C.E., Vonrhein, C., Svergun, D.I., Round, A., Donner, P., Carrondo, M.A.

Revision History

  • Version 1_0: 2011-10-05

    Type: Initial release

  • Version 1_1: 2011-11-16

    Type: Database references

  • Version 1_2: 2014-08-13

    Type: Refinement description