2XSD

Crystal Structure of the dimeric Oct-6 (Pou3f1) POU domain bound to palindromic MORE DNA


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 2XSD

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 25219.56


Macromolecule Entities
Molecule Chains Length Organism Details
POU DOMAIN, CLASS 3, TRANSCRIPTION FACTOR 1 C 164 Mus musculus Fragment: RESIDUES 240-402
Gene Name(s): Pou3f1 Oct6 Otf-6 Otf6 Scip
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*AP*TP*GP*CP*AP*TP*GP*AP*GP*GP*AP)-3' A 11 synthetic
5'-D(*CP*CP*TP*CP*AP*TP*GP*CP*AP*TP*AP)-3' B 11 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

C 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.194
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 93.50 α = 90.00
b = 52.01 β = 129.03
c = 69.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-09-28
  • Released Date: 2010-10-20
  • Deposition author(s): Jauch, R., Choo, S.H., Ng, C.K.L., Kolatkar, P.R.

Revision History

  • 2011-05-08
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance