2XDU

Structure of HSP90 with small molecule inhibitor bound

Structural Biology Knowledgebase: 2XDU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.196

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2XDU

Classification: CHAPERONE

Total Structure Weight: 26801.16

Macromolecule Entities
Molecule Chains Length Organism Details
HEAT SHOCK PROTEIN HSP 90-ALPHA A 236 Homo sapiens Fragment: RESIDUES 14-224
Gene Name(s): HSP90AA1 Gene View HSP90A HSPC1 HSPCA

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MT0
Query on MT0

A 1-CHLORO-4-METHYLPHTHALAZINE
C9 H7 Cl N2
IEDBAGGSOLFBBH-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
LGA
Query on LGA

A PYRIMIDIN-2-AMINE
C4 H5 N3
LJXQPZWIHJMPQQ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DMS
Query on DMS

A DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
LGA Kd: 19000000 nM (99) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.74 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.196
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 67.01 α = 90.00
b = 90.72 β = 90.00
c = 98.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-05-07
  • Released Date: 2010-09-01
  • Deposition author(s): Murray, C.W., Carr, M.G., Callaghan, O., Chessari, G., Congreve, M., Cowan, S., Coyle, J.E., Downham, R., Figueroa, E., Frederickson, M., Graham, B., McMenamin, R., OBrien, M.A., Patel, S., Phillips, T.R., Williams, G., Woodhead, A.J., Woolford, A.J.A.

Revision History

  • 2013-04-24
    Type: Entry title | Details: TITLE
  • 2013-04-24
    Type: Version format compliance | Details: REMARK 4
  • 2013-04-24
    Type: Other | Details: REMARK 900