2WXG

THE CRYSTAL STRUCTURE OF THE MURINE CLASS IA PI 3-KINASE P110DELTA IN COMPLEX WITH SW13.

Structural Biology Knowledgebase: 2WXG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.206

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2WXG

Classification: TRANSFERASE

Total Structure Weight: 108331.91

Macromolecule Entities
Molecule Chains Length Organism Details
PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE 3-KINASE CATALYTIC SUBUNIT DELTA ISOFORM A 940 Mus musculus EC#: 2.7.1.153 IUBMB
Fragment: RESIDUES 106-1044
Gene Name(s): Pik3cd

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZZN
Query on ZZN

A 2-{[4-amino-3-(3-fluoro-5-hydroxyphenyl)- 1H-pyrazolo[3,4-d]pyrimidin-1-yl]methyl}- 5-methyl-3-(2-methylphenyl)quinazolin-4(3H)- one
C28 H22 F N7 O2
AUNMZFMPIXHYCD-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
ZZN IC50: 0.7 nM (94) BindingDB

IC50: 0.7 nM  BindingMOAD
IC50: 0.7 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.206
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 141.76 α = 90.00
b = 64.68 β = 102.95
c = 116.72 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-11-09
  • Released Date: 2010-01-12
  • Deposition author(s): Berndt, A., Miller, S., Williams, O., Lee, D.D., Houseman, B.T., Pacold, J.I., Gorrec, F., Hon, W.-C., Liu, Y., Rommel, C., Gaillard, P., Ruckle, T., Schwarz, M.K., Shokat, K.M., Shaw, J.P., Williams, R.L.

Revision History

  • 2011-07-13
    Type: Refinement description | Details: Fixed TLS group
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor