2WM3

Crystal structure of NmrA-like family domain containing protein 1 in complex with niflumic acid


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.166

Literature

Macromolecules
Sequence Display for 2WM3

Classification: PROTEIN BINDING

Total Structure Weight: 34893.65

Macromolecule Entities
Molecule Chains Length Organism Details
NMRA-LIKE FAMILY DOMAIN CONTAINING PROTEIN 1 A 299 Homo sapiens Fragment: RESIDUES 1-298
Gene Name(s): NMRAL1 Gene View HSCARG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 5 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NFL
Query on NFL

A 2-{[3-(TRIFLUOROMETHYL)PHENYL]AMINO}NICOTINIC ACID
2-[(3-TRIFLUOROMETHYL)PHENYL]AMINO-3-PYRIDINE- CARBOXYLIC ACID (Synonym)
C13 H9 F3 N2 O2
JZFPYUNJRRFVQU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.166
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 68.71 α = 90.00
b = 68.71 β = 90.00
c = 183.79 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2009-06-29
  • Released Date: 2009-08-04
  • Deposition author(s): Bhatia, C., Yue, W.W., Niesen, F., Pilka, E., Ugochukwu, E., Savitsky, P., Hozjan, V., Roos, A.K., Filippakopoulos, P., von Delft, F., Heightman, T., Arrowsmith, C., Weigelt, J., Edwards, A., Bountra, C., Oppermann, U.

Revision History

  • 2011-07-13
    Type: Advisory, Version format compliance
  • 2012-12-05
    Type: Database references, Non-polymer description, Other, Source and taxonomy, Structure summary