2VTK

THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS TYPE 1 IN COMPLEX WITH ADP AND DEOXYTHYMIDINE

Structural Biology Knowledgebase: 2VTK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.175

Literature

Macromolecules
Sequence Display for 2VTK

Classification: TRANSFERASE

Total Structure Weight: 37875.36

Macromolecule Entities
Molecule Chains Length Organism Details
THYMIDINE KINASE A 343 Human herpesvirus 1 EC#: 2.7.1.21 IUBMB
Gene Name(s): TK UL23
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

A ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
THM
Query on THM

A THYMIDINE
DEOXYTHYMIDINE; 2'-DEOXYTHYMIDINE (Synonym)
C10 H14 N2 O5
IQFYYKKMVGJFEH-XLPZGREQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.175
  • Space Group: I 41
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 84.10 α = 90.00
b = 84.10 β = 90.00
c = 155.36 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1997-04-01
  • Released Date: 1997-10-22
  • Deposition author(s): Wild, K., Schulz, G.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values