2VRT

CRYSTAL STRUCTURE OF E. COLI RNASE E POSSESSING M1 RNA FRAGMENTS - CATALYTIC DOMAIN

Structural Biology Knowledgebase: 2VRT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.351
  • R-Value Work: 0.317

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2VRT

Classification: HYDROLASE

Total Structure Weight: 232213.48


Macromolecule Entities
Molecule Chains Length Organism Details
RIBONUCLEASE E A, B, C, D 509 Escherichia coli EC#: 3.1.26.12 IUBMB
Fragment: CATALYTIC DOMAIN, RESIDUES 1-509
Gene Name(s): rne ams hmp1 b1084 JW1071
Macromolecule Entities
Molecule Chains Length Organism Details
5'-R(*UP*UP)-3' E, F 2 Escherichia coli
5'-R(*UP*UP*GP)-3' G, H 3 Escherichia coli

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.351
  • R-Value Work: 0.317
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 93.89 α = 90.00
b = 121.25 β = 99.47
c = 242.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-04-14
  • Released Date: 2008-07-22
  • Deposition author(s): Koslover, D.J., Callaghan, A.J., Marcaida, M.J., Garman, E.F., Martick, M., Scott, W.G., Luisi, B.F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4