2VMI

The structure of seleno-methionine labelled CBM51 from Clostridium perfringens GH95


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.178
  • R-Value Work: 0.150

Literature

Macromolecules
Sequence Display for 2VMI

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 16428.76

Macromolecule Entities
Molecule Chains Length Organism Details
FIBRONECTIN TYPE III DOMAIN PROTEIN A 151 Clostridium perfringens Fragment: CARBOHYDRATE-BINDING MODULE, RESIDUES 900-1050
Gene Name(s): CPF_2129
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.178
  • R-Value Work: 0.150
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 76.72 α = 90.00
b = 76.72 β = 90.00
c = 51.77 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2008-01-25
  • Released Date: 2008-02-19
  • Deposition author(s): Gregg, K., Finn, R., Abbott, D.W., Boraston, A.B.

Revision History

  • Version 1_0: 2008-02-19

    Type: Initial release

  • Version 1_1: 2011-05-08

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance