2VAQ

STRUCTURE OF STRICTOSIDINE SYNTHASE IN COMPLEX WITH INHIBITOR

Structural Biology Knowledgebase: 2VAQ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.01 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 2VAQ

Classification: LYASE

Total Structure Weight: 72597.78

Macromolecule Entities
Molecule Chains Length Organism Details
STRICTOSIDINE SYNTHASE A, B 322 Rauvolfia serpentina EC#: 4.3.3.2 IUBMB
Details: COMPLEX WITH INHIBITOR
Gene Name(s): STR1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
VAW
Query on VAW

A, B (2S,3R,4S)-methyl 4-(2-(2-(1H-indol-3-yl)ethylamino)ethyl)- 2-((2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydro- 2H-pyran-2-yloxy)-3-vinyl-3,4-dihydro-2H- pyran-5-carboxylate
3R, (Synonym)
C27 H36 N2 O9
MYFRJCYMRYXZQB-JVARDMDOSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
VAW N/A in BindingDB
N/A in BindingMoad
IC50: 3 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.01 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.186
  • Space Group: H 3
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 149.99 α = 90.00
b = 149.99 β = 90.00
c = 121.69 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-09-04
  • Released Date: 2008-09-16
  • Deposition author(s): Maresh, J., Giddings, L.A., Friedrich, A., Loris, E.A., Panjikar, S., Trout, B.L., Stoeckigt, J., Peters, B., Oconnor, S.E.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor