2V84

Crystal Structure of the Tp0655 (TpPotD) Lipoprotein of Treponema pallidum


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.234

Literature

Macromolecules
Sequence Display for 2V84

Classification: TRANSPORT PROTEIN

Total Structure Weight: 39710.79

Macromolecule Entities
Molecule Chains Length Organism Details
SPERMIDINE/PUTRESCINE ABC TRANSPORTER, PERIPLASMIC BINDING PROTEIN A 343 Treponema pallidum Fragment: RESIDUES 25-348
Details: CONSTRUCT USED LACKS THE FIRST AMINO ACID RESIDUE (I.E. CYSTEINE) WHICH IS POST-TRANSLATIONALLY ACYLATED.
Gene Name(s): potD TP_0655 TPANIC_0655
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MES
Query on MES

A 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
C6 H13 N O4 S
SXGZJKUKBWWHRA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.260
  • R-Value Work: 0.234
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 51.61 α = 90.00
b = 86.27 β = 90.00
c = 89.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-08-02
  • Released Date: 2007-09-25
  • Deposition author(s): Machius, M., Brautigam, C.A., Tomchick, D.R., Ward, P., Otwinowski, Z., Blevine, J.S., Deka, R.K., Norgard, M.V.

Revision History

  • 2011-07-13
    Type: Advisory, Version format compliance