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A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER
DOI:10.2210/pdb2ram/pdb   NDB ID: PDR051
2RAM
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription/dna
    Structure Weight: 75046.59
    Molecule: DNA (5'-D(*CP*GP*GP*CP*TP*GP*GP*AP*AP*AP*TP*(5IU)P*(5IU)P*CP*CP*AP*GP*CP*CP*G)-3')
    Polymer: 1 Type: dna Length: 20
    Chains: C, D
    Molecule: PROTEIN (TRANSCRIPTION FACTOR NF-KB P65)
    Polymer: 2 Type: protein Length: 273
    Chains: A, B
    Fragment: P65 RESIDUES 19 - 291
    Organism: Mus musculus
    Gene Names: Rela Nfkb3
    UniProtKB: Protein Feature View | Search PDB | Q04207  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Mus musculus   Taxonomy   Common Name: House mouse Expression System: Escherichia coli  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    DTV
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    DTV C4 H10 O2 S2
    (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    5IU
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    5IU C9 H12 I N2 O8 P DU dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PDR051
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Chen, Y.Q.,  Ghosh, S.,  Ghosh, G.

    Deposition:   1997-11-23
    Release:   1998-05-27
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.40
    R-Value: 0.213 (obs.)
    R-Free: 0.308
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 65.81 α = 90.00 
    b = 80.62 β = 90.00 
    c = 167.80 γ = 90.00