2QPZ

Naphthalene 1,2-dioxygenase Rieske ferredoxin

Structural Biology Knowledgebase: 2QPZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.154

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2QPZ

Classification: METAL BINDING PROTEIN

Total Structure Weight: 11501.81

Macromolecule Entities
Molecule Chains Length Organism Details
Naphthalene 1,2-dioxygenase system ferredoxin subunit A 103 Pseudomonas putida Gene Name(s): ndoA nahAB ndoC1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FES
Query on FES

A FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.154
  • Space Group: P 61
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 65.23 α = 90.00
b = 65.23 β = 90.00
c = 49.44 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-07-25
  • Released Date: 2008-09-02
  • Deposition author(s): Brown, E.N., Ramaswamy, S., Karlsson, A., Friemann, R., Parales, J.V., Parales, R., Gibson, D.T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4