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PVUII ENDONUCLEASE COMPLEXED TO AN IODINATED COGNATE DNA
DOI:10.2210/pdb2pvi/pdb   NDB ID: PD0011
2PVI
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 44629.02
    Molecule: DNA (5'-D(*TP*GP*AP*CP*CP*AP*GP*(C38)P*TP*GP*GP*TP*C)-3')
    Polymer: 1 Type: dna Length: 13
    Chains: C, D
    Molecule: TYPE II RESTRICTION ENZYME PVUII
    Polymer: 2 Type: protein Length: 157
    Chains: A, B
    EC#: 3.1.21.4   
    Organism: Proteus vulgaris
    Gene Name: pvuIIR
    UniProtKB: Protein Feature View | Search PDB | P23657  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Proteus vulgaris   Taxonomy   Expression System: Escherichia coli  
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    C38
    Search 
    C38 C9 H13 I N3 O7 P DC dnaLinking
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0011
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Horton, J.,  Cheng, X.

    Deposition:   1998-11-01
    Release:   1999-12-20
    Last Modified (REVDAT):   2009-09-15
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.76
    R-Value: 0.188 (obs.)
    R-Free: 0.255
    Space Group: P 21 21 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 95.80 α = 90.00 
    b = 86.30 β = 90.00 
    c = 48.50 γ = 90.00