2PAV

Ternary complex of Profilin-Actin with the Last Poly-Pro of Human VASP

Structural Biology Knowledgebase: 2PAV SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.158

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2PAV

Classification: STRUCTURAL PROTEIN

Total Structure Weight: 58717.90

Macromolecule Entities
Molecule Chains Length Organism Details
Actin, alpha skeletal muscle A 375 Oryctolagus cuniculus Mutation: H73X
Gene Name(s): ACTA1 Gene View ACTA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Profilin-1 P 139 Homo sapiens Gene Name(s): PFN1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Vasodilator-stimulated phosphoprotein V 16 Homo sapiens Gene Name(s): VASP Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
HIC
Query on HIC
A L-PEPTIDE LINKING C7 H11 N3 O2 HIS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.158
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 37.47 α = 90.00
b = 75.46 β = 90.00
c = 180.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-03-27
  • Released Date: 2007-10-23
  • Deposition author(s): Ferron, F., Rebowski, G., Dominguez, R.

Revision History

  • 2013-03-06
    Type: Flag residual B-value | Details: --
  • 2013-03-06
    Type: Other | Details: Release SF file
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4