2P8U

Crystal structure of human 3-hydroxy-3-methylglutaryl CoA synthase I


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.159

Literature

Macromolecules
Sequence Display for 2P8U

Classification: TRANSFERASE

Total Structure Weight: 108292.90

Macromolecule Entities
Molecule Chains Length Organism Details
Hydroxymethylglutaryl-CoA synthase, cytoplasmic A, B 478 Homo sapiens EC#: 2.3.3.10 IUBMB
Mutation: C129X
Gene Name(s): HMGCS1 Gene View HMGCS
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
COA
Query on COA

A, B COENZYME A
C21 H36 N7 O16 P3 S
RGJOEKWQDUBAIZ-IBOSZNHHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
SCY
Query on SCY
A, B L-PEPTIDE LINKING C5 H9 N O3 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.159
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 92.76 α = 90.00
b = 92.76 β = 90.00
c = 235.53 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-03-23
  • Released Date: 2007-04-03
  • Deposition author(s): Turnbull, A., Shafqat, N., Salah, E., Niesen, F.H., Burgess, N., Bunkoczi, G., Debreczeni, J., Pike, A.C.W., Umeano, C., Gorrec, F., von Delft, F., Weigelt, J., Arrowsmith, C.H., Sundstrom, M., Edwards, A., Oppermann, U., Structural Genomics Consortium (SGC)

Revision History

  • Version 1_0: 2007-04-03

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Advisory, Refinement description, Version format compliance

  • Version 1_3: 2017-10-18

    Type: Refinement description