2P5O

Crystal structure of RB69 GP43 in complex with DNA containing an abasic site analog


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.245

Literature

Macromolecules
Sequence Display for 2P5O

Classification: transferase / DNA

Total Structure Weight: 463320.19


Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase A, B, C, D 903 Escherichia virus rb69 EC#: 2.7.7.7 IUBMB 3.1.11 IUBMB
Mutation: M65M, M75M, M85M, M189M, M199M, D222A, M256M, D327A, M347M, M408M, M461M, M462M, M489M, M541M, M553M, M592M, M659M, M670M, M674M, M681M, M683M, M715M, M728M, M752M, M866M, M900M
Gene Name(s): 43
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
Template DNA E, G, I, K 18 synthetic
Primer DNA F, H, J, L 15 synthetic

Small Molecules
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
3DR
Query on 3DR
E, G, I, K DNA LINKING C5 H11 O6 P --
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.290
  • R-Value Work: 0.245
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 133.02 α = 90.00
b = 123.21 β = 95.82
c = 165.62 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-03-15
  • Released Date: 2007-04-03
  • Deposition author(s): Hogg, M., Wallace, S.S., Doublie, S.
  • Previous versions: 1RV2

Revision History

  • 2008-05-01
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance
  • 2014-09-10
    Type: Database references