2P5G

Crystal structure of RB69 gp43 in complex with DNA with dAMP opposite an abasic site analog in a 21mer template


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.234

Literature

Macromolecules
Sequence Display for 2P5G

Classification: transferase / DNA

Total Structure Weight: 467046.56


Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase A, B, C, D 903 Escherichia virus rb69 EC#: 2.7.7.7 IUBMB 3.1.11 IUBMB
Mutation: D222A, D327A
Gene Name(s): 43
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
Template DNA E, G, I, K 21 synthetic
Primer DNA F, H, J, L 15 synthetic

Small Molecules
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
3DR
Query on 3DR
E, G, I, K DNA LINKING C5 H11 O6 P --
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.234
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 131.63 α = 90.00
b = 122.27 β = 96.45
c = 163.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-03-15
  • Released Date: 2007-10-23
  • Deposition author(s): Zahn, K.E., Belrhali, H., Wallace, S.S., Doublie, S.

Revision History

  • Version 1_0: 2007-10-23

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance