2OUA

Crystal Structure of Nocardiopsis Protease (NAPase)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 2OUA

Classification: hydrolase / hydrolase inhibitor

Total Structure Weight: 39437.07

Macromolecule Entities
Molecule Chains Length Organism Details
Serine protease A, B 188 Nocardiopsis alba Mutation: A59G
Gene Name(s): napA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AES
Query on AES

A, B 4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE
AEBSF (Synonym)
C8 H10 F N O2 S
MGSKVZWGBWPBTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DIO
Query on DIO

A, B 1,4-DIETHYLENE DIOXIDE
C4 H8 O2
RYHBNJHYFVUHQT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.176
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 61.60 α = 90.00
b = 61.60 β = 90.00
c = 184.48 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-02-09
  • Released Date: 2007-02-20
  • Deposition author(s): Kelch, B.A., Agard, D.A.

Revision History

  • Version 1_0: 2007-02-20

    Type: Initial release

  • Version 1_1: 2008-05-01

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Non-polymer description, Version format compliance

  • Version 1_3: 2012-06-06

    Type: Non-polymer description