2OTY

1,2-dichlorobenzene in complex with T4 Lysozyme L99A


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.83 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 2OTY

Classification: HYDROLASE

Total Structure Weight: 18869.07

Macromolecule Entities
Molecule Chains Length Organism Details
Lysozyme X 162 Enterobacteria phage t4 sensu lato EC#: 3.2.1.17 IUBMB
Mutation: C54T, C97A, L99A
Gene Name(s): E
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
YAN
Query on YAN

X 1,2-DICHLOROBENZENE
C6 H4 Cl2
RFFLAFLAYFXFSW-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

X PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BME
Query on BME

X BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
YAN N/A in BindingDB
Kd: 21000 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.83 Å
  • R-Value Free: 0.235
  • R-Value Work: 0.196
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 60.21 α = 90.00
b = 60.21 β = 90.00
c = 97.03 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-02-09
  • Released Date: 2007-08-07
  • Deposition author(s): Graves, A.P., Shoichet, B.K.

Revision History

  • Version 1_0: 2007-08-07

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2017-10-18

    Type: Refinement description