2OPP

Crystal Structure of HIV-1 Reverse Transcriptase in Complex with GW420867X.

Structural Biology Knowledgebase: 2OPP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.205

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2OPP

Classification: TRANSFERASE

Total Structure Weight: 113309.02

Macromolecule Entities
Molecule Chains Length Organism Details
Reverse transcriptase/ribonuclease H A 542 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Fragment: P66
Mutation: C280X
Gene Name(s): gag-pol
p51 RT B 427 Human immunodeficiency virus 1 EC#: 2.7.7.49 IUBMB
Fragment: P51
Gene Name(s): gag-pol

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HBQ
Query on HBQ

A ISOPROPYL (2S)-2-ETHYL-7-FLUORO-3-OXO-3,4- DIHYDROQUINOXALINE-1(2H)-CARBOXYLATE
C14 H17 F N2 O3
KELNNWMENBUHNS-NSHDSACASA-N
Ligand Explorer
 
JSmol
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CSD
Query on CSD
A L-PEPTIDE LINKING C3 H7 N O4 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.55 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.205
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 138.50 α = 90.00
b = 115.30 β = 90.00
c = 65.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-01-30
  • Released Date: 2007-05-22
  • Deposition author(s): Ren, J., Nichols, C.E., Chamberlain, P.P., Weaver, K.L., Chan, S.J.H., Kleim, J., Stammers, D.K.

Revision History

  • 2014-11-12
    Type: Non-polymer description | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4