2OGG

Structure of B. subtilis trehalose repressor (TreR) effector binding domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 2OGG

Classification: TRANSCRIPTION

Total Structure Weight: 18535.61

Macromolecule Entities
Molecule Chains Length Organism Details
Trehalose operon transcriptional repressor A 152 Bacillus subtilis Fragment: Effector binding domain, residues 90-238
Mutation: M201M
Gene Name(s): treR yfxA BSU07820
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.247
  • R-Value Work: 0.190
  • Space Group: I 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 69.72 α = 90.00
b = 69.72 β = 90.00
c = 236.54 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-01-05
  • Released Date: 2007-02-06
  • Deposition author(s): Rezacova, P., Krejcirikova, V., Borek, D., Moy, S.F., Joachimiak, A., Otwinowski, Z., Midwest Center for Structural Genomics (MCSG)

Revision History

  • Version 1_0: 2007-02-06

    Type: Initial release

  • Version 1_1: 2007-10-15

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Advisory, Derived calculations, Version format compliance