2OEK

Crystal structure of a rubisco-like protein from Geobacillus kaustophilus liganded with Mg2+ ions


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 2OEK

Classification: ISOMERASE

Total Structure Weight: 90056.73

Macromolecule Entities
Molecule Chains Length Organism Details
2,3-diketo-5-methylthiopentyl-1-phosphate enolase A, B 413 Geobacillus kaustophilus EC#: 5.3.2.5 IUBMB
Mutation: K173X
Gene Name(s): mtnW GK0953
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
KCX
Query on KCX
A, B L-PEPTIDE LINKING C7 H14 N2 O4 LYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.185
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 130.76 α = 90.00
b = 59.54 β = 103.24
c = 109.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-12-30
  • Released Date: 2007-03-20
  • Deposition author(s): Fedorov, A.A., Imker, H.J., Fedorov, E.V., Almo, S.C., Gerlt, J.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values