2O4L

Crystal Structure of HIV-1 Protease (Q7K, I50V) in Complex with Tipranavir

Structural Biology Knowledgebase: 2O4L SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.33 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.190

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2O4L

Classification: Viral Protein

Total Structure Weight: 22439.51

Macromolecule Entities
Molecule Chains Length Organism Details
protease A, B 99 Human immunodeficiency virus 1 Mutation: Q7K, I50V
Gene Name(s): gag-pol pol
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
TPV
Query on TPV

A N-(3-{(1R)-1-[(6R)-4-HYDROXY-2-OXO-6-PHENETHYL- 6-PROPYL-5,6-DIHYDRO-2H-PYRAN-3-YL]PROPYL}PHENYL)- 5-(TRIFLUOROMETHYL)-2-PYRIDINESULFONAMIDE
TIPRANAVIR (Synonym)
C31 H33 F3 N2 O5 S
SUJUHGSWHZTSEU-FYBSXPHGSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
TPV N/A in BindingDB
Kd: 0.608 nM  BindingMOAD
Kd: 0.608 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.33 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.190
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 58.96 α = 90.00
b = 86.41 β = 90.00
c = 46.19 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-12-04
  • Released Date: 2006-12-12
  • Deposition author(s): Armstrong, A.A., Muzammil, S., Jakalian, A., Bonneau, P.R., Schmelmer, V., Freire, E., Amzel, L.M.

Revision History

  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4