2NYX

Crystal structure of RV1404 from Mycobacterium tuberculosis

Structural Biology Knowledgebase: 2NYX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 2NYX

Classification: TRANSCRIPTION

Total Structure Weight: 75215.89

Macromolecule Entities
Molecule Chains Length Organism Details
Probable transcriptional regulatory protein, Rv1404 A, B, C, D 168 Mycobacterium tuberculosis Mutation: M79M, M131M
Gene Name(s): Rv1404
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B, C, D L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.229
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 51.26 α = 90.00
b = 54.75 β = 90.00
c = 227.51 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-11-21
  • Released Date: 2006-12-05
  • Deposition author(s): Yu, M., Bursey, E.H., Radhakannan, R., Kim, C.-Y., Kaviratne, T., Woodruff, T., Segelke, B.W., Lekin, T., Toppani, D., Terwilliger, T.C., Hung, L.-W., TB Structural Genomics Consortium (TBSGC), Integrated Center for Structure and Function Innovation (ISFI)

Revision History

  • 2011-07-13
    Type: Flag residual B-value | Details: Tagged residual B temperature factor
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4