2NYT

The APOBEC2 Crystal Structure and Functional Implications for AID

Structural Biology Knowledgebase: 2NYT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.246

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2NYT

Classification: HYDROLASE

Total Structure Weight: 87377.30

Macromolecule Entities
Molecule Chains Length Organism Details
Probable C->U-editing enzyme APOBEC-2 A, B, C, D 190 Homo sapiens EC#: 3.5.4 IUBMB
Gene Name(s): APOBEC2 Gene View

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.295
  • R-Value Work: 0.246
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 37.84 α = 90.00
b = 89.41 β = 90.00
c = 245.77 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2006-11-21
  • Released Date: 2007-01-09
  • Deposition author(s): Prochnow, C., Bransteitter, R., Klein, M., Goodman, M., Chen, X.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4