NMR Ensemble

2LYA

Structure of HIV-1 myr(-) matrix protein in complex with 1,2-dioctanoyl-sn-phosphatidylcholine

Structural Biology Knowledgebase: 2LYA SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 20
  • Selection Criteria: Structures with the Lowest Energy

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2LYA

Classification: VIRAL PROTEIN

Total Structure Weight: 16074.27

Macromolecule Entities
Molecule Chains Length Organism Details
Matrix protein p17 A 137 Human immunodeficiency virus 1 Gene Name(s): gag-pol

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PC8
Query on PC8

A 1,2-DIOCTANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
C24 H49 N O8 P
YHIXRNNWDBPKPW-JOCHJYFZSA-O
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
PC8 N/A in BindingDB
N/A in BindingMoad
Kd: 65000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 20
  • Selection Criteria: structures with the lowest energy

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-14
  • Released Date: 2013-02-13
  • Deposition author(s): Vlach, J., Saad, J.

Revision History

  • 2013-04-03
    Type: Citation | Details: Citation update
  • 2013-03-06
    Type: Citation | Details: Citation update