2KXM

Solution NMR Structure of the 27 nucleotide engineered neomycin sensing riboswitch RNA-ribostmycin complex


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 10
  • Selection Criteria: Target Function

Literature

Macromolecules
Sequence Display for 2KXM

Classification: RNA / Antibiotic

Total Structure Weight: 9011.50

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (27-MER) A 27 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RIO
Query on RIO

A RIBOSTAMYCIN
2R,,6-DIAMINO-2-(3,4-DIOL; (1R (Synonym)
C17 H34 N4 O10
NSKGQURZWSPSBC-VVPCINPTSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 10
  • Selection Criteria: target function

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2010-05-10
  • Released Date: 2011-04-20
  • Deposition author(s): Duchardt-Ferner, E., Weigand, J.E., Ohlenschlager, O., Schmidtke, S.R., Suess, B., Wohnert, J.

Revision History

  • Version 1_0: 2011-04-20

    Type: Initial release

  • Version 1_1: 2011-07-13

    Type: Version format compliance

  • Version 1_2: 2013-09-04

    Type: Structure summary

  • Version 1_3: 2014-02-05

    Type: Experimental preparation