NMR Ensemble

2KXM

Solution NMR Structure of the 27 nucleotide engineered neomycin sensing riboswitch RNA-ribostmycin complex

Structural Biology Knowledgebase: 2KXM SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 10
  • Selection Criteria: Target Function

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 2KXM

Classification: RNA / Antibiotic

Total Structure Weight: 9011.57

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (27-MER) A 27 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RIO
Query on RIO

A RIBOSTAMYCIN
2R,,6-DIAMINO-2-(3,4-DIOL; (1R (Synonym)
C17 H34 N4 O10
NSKGQURZWSPSBC-VVPCINPTSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 10
  • Selection Criteria: target function

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2010-05-10
  • Released Date: 2011-04-20
  • Deposition author(s): Duchardt-Ferner, E., Weigand, J.E., Ohlenschlager, O., Schmidtke, S.R., Suess, B., Wohnert, J.

Revision History

  • 2014-02-05
    Type: Experimental method | Details: --
  • 2013-09-04
    Type: Entry authorship | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4