2JQ7

Model for thiostrepton binding to the ribosomal L11-RNA

Structural Biology Knowledgebase: 2JQ7 SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200
  • Conformers Submitted: 10
  • Selection Criteria: Top Ranked Ensemble According to the Average Interaction Energy and Buried Surface Area

Literature

Macromolecules
Sequence Display for 2JQ7

Classification: RIBOSOME / ANTIBIOTIC

Total Structure Weight: 35611.30


Macromolecule Entities
Molecule Chains Length Organism Details
50S RIBOSOMAL PROTEIN L11 A 141 Thermotoga maritima Gene Name(s): rplK TM_0454
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
THIOSTREPTON C 19 Streptomyces azureus Gene Name(s): tpdA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
RIBOSOMAL RNA B 58 Escherichia coli

Small Molecules
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000223
Query on PRD_000223
C THIOSTREPTON Thiopeptide /
Antibiotic
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200
  • Conformers Submitted: 10
  • Selection Criteria: TOP-RANKED ENSEMBLE, ACCORDING TO THE AVERAGE INTERACTION ENERGY AND BURIED SURFACE AREA

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2007-05-30
  • Released Date: 2007-07-03
  • Deposition author(s): Jonker, H.R.A., Ilin, S., Grimm, S.K., Woehnert, J., Schwalbe, H.
  • Previous versions: 2NYO

Revision History

  • 2015-05-27
    Type: Source and taxonomy | Details: --
  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2011-07-27
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-27
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-27
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-27
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-27
    Type: Function and keywords | Details: Function and keywords
  • 2011-07-27
    Type: Linkage | Details: Linkage
  • 2011-07-27
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4